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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgttttttatgttttcaatttggtcattgacagagtattttagtgttgctaaacttgatcaattatttatgactaacagGAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAGATTCCAGAGTGGTTTGAGTGCCAGAGTCGGGGACCGTCAATTTTTTTCT

Basic information

species Glycine max
transcript GLYMA16G25110.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240026|gb|BG359335.1|BG359335
EST:     GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAG                         GAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG
genomic: GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAGgtagtgtttt ... tgactaacagGAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG
EST: gi|17400654|gb|BM177436.1|BM177436
EST:     GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAG                         GAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG
genomic: GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAGgtagtgtttt ... tgactaacagGAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG
EST: gi|17400101|gb|BM176883.1|BM176883
EST:     GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAG                         GAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG
genomic: GGACATGCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAGgtagtgtttt ... tgactaacagGAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgacagagtattttagtgttgctaaacttgatcaattatttatgactaacagGAACTGCTTGAGGCTCGAGACATTCACTTAATAAGTTTGCCAATAGTAAAGATTCCAGAGTGGTTTGAGTGCCAGAGTCGGGGACCGTCAATTTTTTTCT
                         taaacttgatcaatta  TA-rich tract