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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcccacttatattacaatcatcagtgttctgctgagttttctttgttaaagtttaatgtttcaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTG

Basic information

species Glycine max
transcript GLYMA16G24650.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24650.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 3'ss of exon 14
gtatgg-tcccacttat-attacaatcatcagtgttctgctgagttttctttgttaaagtttaatgtttcaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTG
|||||| |    ||| |   | |||| ||  |  |  |    | | ||   | ||    | |    |||    |  | |  |||||||  ||||||| |||| |||||||||||| |||| || || ||||| ||||| |||||||| ||| | |||   || ||||| || ||||
gtatggatatttcttgttgctgcaat-atttgcatcttctccaatatttgatcttctgatcttccatttatgatggtctt-agGTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtgttctgctgagttttctttgttaaagtttaatgtttcaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTG
                              gtttaat  putative branch site (score: 4)
                                      tttcaactcttttcc  CT-rich tract
                ttttctttgttaaagt  TA-rich tract