Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatatcaattatcaagtattggcaaaactcacaaaataatagtcatcattgccattctatgctttataatgagcttaactaaattgatctttcagcagGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTACGCAAGGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTGCATAATCAAAACCCTG

Basic information

species Glycine max
transcript GLYMA16G24580.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24580.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G66380.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------------gctatatcaattatca-agtattggcaaaactcacaaaataatagtcatcattgccattctatgctttata-atgagcttaactaaattgatctttcagcagGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTACGCAAGGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTGCATAATCAA-AACCCTG
                                              |||   |||    || ||| ||||  ||    | || || |   | |     |  |    | || ||| | ||    |    || |||     |||||||||| |||||||||||||||||||||||||| |||||||| || || ||  | ||||| ||||| || || ||||  |  | ||| |  |  ||   ||  | 
gttagtaactatcctgatctatctcttgtaacgttcgttcgtaaaactaccacaagatccacagttttgg--aactataaaagatgactattagttgcgaaagaggaggccttacagattgaatggtttacattttgggttcagcagGTTTCTCATGGTGCTATTCAGTTCACAGCTTATGAGGAACTCCGTAAAATCATTGTGGATTTGAA-AGAAAGGAGAAGAAAGTCCGAATCCACTGACAATC

upper sequence: GLYMA16G24580.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 6
---gctatatcaattatcaagtattggcaaaactcacaaaataatagtcatcattgccattctatgctttataatgagcttaactaaat-tgatctttcagcagGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTACGCAAGGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTGCATAATCAAAACCCTG
       |   || |    | | |  |  | |    |||  ||| | |     |   ||| || | | ||    |||  |    |   | || |  |||||||||| |||||||||||| |||||||||  |  |||||||| || || ||  || ||||||| |||||| |||| | |||||    | ||  |  ||      
attatagtgctaagttatgaatctgtgtcagatatgcaagctaaga-taggattcagcatgctttccatttatgtgaattctgttgtttgtgttgcttcagCAGGTTTCTCATGGTGCTGTTCAGTTCATGGTGTATGAGGAACTTCGTAAATTTGTTGTTGAATTTAAGTGTAAAGAAAGTAACAAGAATCTTGGAAGTG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattgccattctatgctttataatgagcttaactaaattgatctttcagcagGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTACGCAAGGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTGCATAATCAAAACCCTG
                                            tctttc  CT-rich tract
                               ttaactaaattgat  TA-rich tract