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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttatcagtttcaacaattggctttgatcaactactatagatgtattcatttgttctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG

Basic information

species Glycine max
transcript GLYMA16G24320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24320.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G116427_T01 (Zea mays), 3'ss of exon 4
gtatgctttatcagtttcaacaattggctttgatcaactactatagatgtattcatttgt--tctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG
                          |      | || | | | || ||  |   |  |   ||||     |  |     ||  |||      || |||||  |||||||||||| ||||| ||||| || || |||||||| ||| |||| |||||||| ||
--------------------------gtcagtgttaagttcaagagctggttatgtcaggaatctgaatgaacatactcagtctaattgttcattgtgtgaaacagGTATGAGATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG

upper sequence: GLYMA16G24320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g02920.t01 (Vitis vinifera), 3'ss of exon 4
------gtatgctttatcagttt-caacaattggctttgatcaactactatagatgtattcatttgttctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG
       |   | | |  | ||| ||||||||   |||  |||  |  | ||    |||  |||| ||    |    | || || |  |||| |||||  |||| |  ||||||||| || |||||||| |||||||| |  || ||||||||||| |||||||||||
gtctggtttcacataaatactttgcaacaatt--ttttcctcatatgatgtaagaatatgtattttttacact----tcttcataggacaatgacatgcattgtaacacagGTATGAAATTGACAAAGTGACTGCTGGACTACGTTTAGATTTGAATCTTGAAAGGGG

upper sequence: GLYMA16G24320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 5
------gtatgctttatcagttt-caacaattggctttgatcaactactatagatgtattcatttgttctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG
       | | | |    | ||| ||||||||   |||  | |  |  | ||    |||  |||| || |  |    ||||||| |  |||| |||||  |||| |  ||||||||| || ||||||||||||| ||| || || |||||||| || |||||||||||
gtctggttttacatagatattttgcaacaatt--ttttccttatatgatgtaaggatatatattttttatact----tttttataggacaatgacatgcattgtaacacagGTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023866|gb|CX710607.1|CX710607
EST:     GAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAG                         GTATGAGATAGTCAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGA
genomic: GAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAGgtatgcttta ... tgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatttgttctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG
             tgttatgatttttat  TA-rich tract