1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgctctgttcgttttttactctttccttgcaaaagtatattatagtttgctccagatcatgaattatgctgtccactagacttcctagtttgattgtcatgttgcaagctgaccttttctctctgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCG
species | Glycine max |
transcript | GLYMA16G24290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGAT CTTGAAATAGATGGAGACNNNNNNNATTTCTTGGCTGATGCTACTGCTATAEST: gi|7283896|gb|AW596498.1|AW596498
genomic: AACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGATgtatgctctg ... tgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATA
EST: AACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGAT CTTGAAATAGATGGAGACNNNNNNNATTTCTTGGCTGATGCTACTGCTATAEST: gi|254333269|gb|GR850519.1|GR850519
genomic: AACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGATgtatgctctg ... tgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATA
EST: CTCTTTTGATGCTGCTGAT CTTGAAATAGATGGAGACNNNNNNNATTTCTTGGCTGATGCTACTGCTATA
genomic: CTCTTTTGATGCTGCTGATgtatgctctg ... tgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATA
gacttcctagtttgattgtcatgttgcaagctgaccttttctctctgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCG
agctgac putative branch site (score: 3)
ctgaccttttctctct CT-rich tract
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctgttcgttttttactctttccttgcaaaagtatattatagtttgctccagatcatgaattatgctgtccactagacttcctagtttgattgtcatgttgcaagctgaccttttctctctgttttgcagCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT