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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaaatcctcaccctgcgatttgtgtaatattattggagtgaagacatgtatatatttttttgtatttgtacatctaaactctttaaagatgctatcatactttcctaggctcacaatttaattttttttttctttttacctattgtatctgttagAGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG

Basic information

species Glycine max
transcript GLYMA16G23920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23920.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0023g03280.t01 (Vitis vinifera), 3'ss of exon 5
gtaactaaatcctcaccctgcgatttgtgtaatattattggagtgaagacatgtatatatttttttgtatttgtacatctaaactctttaaagatgctatcatactttcctaggctcacaatttaattttttttttctttttacctattgtatctgttagAGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG
                                              || ||    |  | |      ||||   |  | || |    ||||     |   |||| | |  ||   | | | |  ||  | |||||      | || ||    ||||  ||||||| |||||||||   ||| || ||||||||| ||||||||||||||||||||| ||| ||  ||   ||||| || ||
----------------------------------------------aggcacacctgaaatcaggaatattgaaatctgtaca----ttaagtgcac-gccatattgtggta---tgagattccaaaatgtttttg-----tgcccatgaactctgc-agAGCAAAGCAATGGCGTGATGGGGACTGGATGTGCACAAATTGCAACAATCATAATTTTGCATCTCGATCCCAGTGCAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999956|gb|BI320770.1|BI320770
EST:     GCCACATGGCTTCCACCTCAAGCTTCTGCACCTGCCCTCCTTGGAAAAGG                         AGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCA
genomic: GCCACATGGCTTCCACCTCAAGCTTCTGCACCTGCCCTCCTTGGAAAAGGgtaactaaat ... tatctgttagAGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctaggctcacaatttaattttttttttctttttacctattgtatctgttagAGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG
                     ttttttttttcttttt  CT-rich tract
            acaatttaattttttt  TA-rich tract