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...cagaaccagggtcaatgatttttggttatatgtttatgtgtttggcagaaagctgtttttgtgtaccagaactaatttcctcttcatttgctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGAC
species | Glycine max |
transcript | GLYMA16G23870.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|193468914|gb|FK432712.1|FK432712
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|193558633|gb|FK516222.1|FK516222
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: TTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTG-AAGAGACGCAGCGGTGGTTGTAAGGCAGATEST: gi|207736879|gb|GD709496.1|GD709496
genomic: TTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGAT
EST: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA GAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGG
genomic: GTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAgtaagtatgg ... ctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGG
cagaaagctgtttttgtgtaccagaactaatttcctcttcatttgctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGAC
aactaat putative branch site (score: 2)
tttcctcttcatttgc CT-rich tract
aactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaaccagggtcaatgatttttggttatatgtttatgtgtttggcagaaagctgtttttgtgtaccagaactaatttcctcttcatttgctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA