1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcatattatagtaatttcttgaataagaataggggtatattatgggagttttttgcattgaaagtttctcactagtttctcacttttacctgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTG
species | Glycine max |
transcript | GLYMA16G23840.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTG GTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAEST: gi|193685341|gb|FK625801.1|FK625801
genomic: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGgtaacaattt ... tgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAA
EST: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTG GTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAAGACTTCACCTGEST: gi|193596793|gb|FK553127.1|FK553127
genomic: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGgtaacaattt ... tgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAA-G-CTTCACCTG
EST: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTG GTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGACTTACACCTG
genomic: TGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGgtaacaattt ... tgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAG-CTT-CACCTG
gagttttttgcattgaaagtttctcactagtttctcacttttacctgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTG
ttctcac putative branch site (score: 2)
tttctcacttttacct CT-rich tract
attgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatattatagtaatttcttgaataagaataggggtatattatgggagttttttgcattgaaagtttctcactagtttctcacttttacctgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - -aataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg