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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattctacccatttttcttctaactctgataggagagtttgaactttggactcttatgcattttcttttaaattctttgaaccttggactcttgtggcagTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCTGCAGGCAGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAA

Basic information

species Glycine max
transcript GLYMA16G23590.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G147671_T02 (Zea mays), 3'ss of exon 5
aattctacccatttttcttctaactctgataggagagtttgaactttggactcttatgcattttcttttaaattctttgaaccttggactcttgtggcagTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCTGCAGGCAGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAA-----
                    ||| |  |      |    ||   | |    | |  |    |  | | ||  ||      |  ||    ||||    ||| |||||||| |||||||||||    |||||||||||||||||||||||   |   | | |||   | |    ||| |   |||   | ||| |    |       
-------------------gtaattgggtgccatgttcctgcgttctaagttttcttatgctg-catatatgttaaccttatttttctttctttatccagCACTCCTATATTTACTGGTGA---AGAAGGTGGAAGTGGTTTTGCTGCTTCCGCAGCAGCTGCCGTAGCTACTGGAGC--ATCTGGATTTGAATTTGGTGTGGAC

upper sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S14_318V6.2 (Physcomitrella patens), 3'ss of exon 5
aattctacccatttttcttctaactctgataggagagtttgaact-ttggactcttatgcattttcttttaaat------tctttgaaccttggactcttgtggcagTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCTGCAGGCAGTGT---ATCTGGATTTGAGTTTGGTGTTGATC-CAAACTTGGACCCTGAA
          || || |||  || |||||| |       ||  || ||||    | ||   ||||  | | |        ||| | |    |||   ||    ||||| || |||| ||||||||||| || |||||||||||||| ||||||||||    ||    |||||     | |  ||  |||| |     |  |||  |     
-------atgatcttactttgaattctgatggtttgtactggcctcttggtaaatgatatgttttggtatcaccagtctctctctaatttatggttactccacgcagTTCTTCTATCTTTACTGGTGATGGAGAAGGTGGAAGTGGATTTGCTGCAGCTGCTGCCGCATCTGCTGCCGCGGCTGCCGTTGGTGGTGGAGGTGGTGCA----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggactcttatgcattttcttttaaattctttgaaccttggactcttgtggcagTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCTGCAGGCAGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAA
                                           ctcttgt  CT-rich tract
              attttcttttaaattc  TA-rich tract