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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttattttgataattgaacccttttattgtgtatatgtccactacagaattgctcatgtgcatgcacatgttactgaactgaagctgttttctgagacgtagGTTGAGTCATATTTGCAAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA

Basic information

species Glycine max
transcript GLYMA16G20260.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttattttgataattgaacccttttattgtgtatatgtccactacagaattgctcatgtgcatgcacatgttactgaactga-agctgttttctga----gacgtagGTTGAGTCATATTTGCAAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA
         ||    |  | |||    | ||| | ||  | | |         |||  | | |  |||   |  ||| |    |   |  | |||||||     |  | |||| || || ||||| |  || ||||| ||||||||||||||||| ||||||||||| 
---------ttctccatctcaacatcctgatt-tctacttattcttccttcttttgtgcct-taaatgggaactttattattttctcattttttttctggtttggctgcagGTGGAATCGTATTTACGTATCATTGGAGAGCCAAAGCTTCCGTCTGCATTTCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgctcatgtgcatgcacatgttactgaactgaagctgttttctgagacgtagGTTGAGTCATATTTGCAAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA
                                     ctgttttct  CT-rich tract