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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacacaattgcacacatgttaaaatattgtttacaatcatgtgactgctgcatacacgctaaaccgttctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAG

Basic information

species Glycine max
transcript GLYMA16G19390.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19390.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 13
gtaagtacacaattgcacacatgttaaaatattgtttacaatcatgtgactgctgcatacacgctaaaccgttctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAG
     |  ||||     |  | || | |   |||| |   |        ||| | |||  || ||     |    || |   ||| ||    |||    ||  | ||||   || ||      ||||||| |||| ||||  |||||||||||||| |||||||| |||||||||
-----tgaacaacgtagcggaggtaacagggttgtctgttact------ctgtttcattaacact-----gccacttatgtgtttgtg----catt---ctaatacttaatttcctgga----gcagTTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAG
      taaatttatgtta  TA-rich tract