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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcctgttgttattattaagatgcttgttattttcttggaagtccatgagaaattactcatgtatactatttttatcctgcagTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGG

Basic information

species Glycine max
transcript GLYMA16G18110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G35980.2 (Arabidopsis thaliana), 3'ss of exon 3
----gtaacctcctgttgttattattaagatgcttgtt-attttcttggaagtcca--tgagaaattactcatgtatactatttttatcctg------cagTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGG
    ||||        | ||   || |   |   | || || |||||||  ||  |  |    | |      ||| |  || ||||  | ||       || |||| |||||||||||||||||||||||| | || || ||||| ||||| || || ||  || ||||| | ||||||||||| ||||||||| | || |
gtatgtaattattcaatatttgaatgatcttttgtattcatattcttggtggtgaaaatcgctagtggggtctgtctcttacttttcgcttgggtgtgtagCTAAACAAGAAGTATGATCCTGAGGATAAGAACCATATCGTTCGCATATACGACTACTTCTTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCTAG

upper sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------------------gtaa--cctcctgttgttattat-taagatgc-ttgttattttcttggaagtccatgagaaattactcatgta---tactatttttatcctgcagTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGG
                                                || |  |||  | ||   ||||| |  | ||  |||  |||| |   |   |           |  || |||    | ||  ||      ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||  |||| || ||||||||||||   ||||| ||||| |
gtgaggaaattcttcttgagttggatctcccacatgcagtgtattttagtgattcctttttttcccattatctttggtgtattgaaatttaccaagttcttttcttttttcttttcgtgttctttcctggttgctatttgcagTTAAATAAGAAGTATGATCCCGAGGATAAGAATCACATTGTTCGTATCTATGATTACTTTGTTCATCAGCGTCATTTGTGCATTGCTTTTGAGTTGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcttggaagtccatgagaaattactcatgtatactatttttatcctgcagTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGG
                                         tttttatcct  CT-rich tract
                               atgtatactattttta  TA-rich tract