1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttaatgacttgttatttgttttgtgctaatctctttcttcgtagagccgagaagttcactctaaattctcattctttttgacggggtatctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTGGGTCTTGTCTGGTCCACCGATCAATTATGAGCGCAGGTGGCGTGGATG
species | Glycine max |
transcript | GLYMA16G17500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTEST: gi|254342914|gb|GR859076.1|GR859076
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTEST: gi|208109169|gb|GD901637.1|GD901637
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTEST: gi|16105942|gb|BI893682.1|BI893682
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTEST: gi|22524234|gb|BU083045.1|BU083045
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTEST: gi|6567183|gb|AW234800.1|AW234800
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATG GTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATATGgtactttttt ... ctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTT
agccgagaagttcactctaaattctcattctttttgacggggtatctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTGGGTCTTGTCTGGTCCACCGATCAATTATGAGCGCAGGTGGCGTGGATG
attcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatgacttgttatttgttttgtgctaatctctttcttcgtagagccgagaagttcactctaaattctcattctttttgacggggtatctgattttagGTGGAGTTTATCTCCTTGAAATTCACCGGATTCTTCGCCCCGGAGGATTTTGGGTCTTGTCTGGTCCACCGATCAATTATGAGCGCAGGTGGCGTGGATG
- - -tgacttg
- - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacgggg