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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgcaaaattcaaaggaatttgaaattaagttacaaggaaaatattaagcatttgtaaattttatttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171364|gb|HO016396.1|HO016396
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6070525|gb|AW099912.1|AW099912
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986447|gb|BE660555.1|BE660555
EST:     GGTACTGNGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACANCCAATTTGCACTTCANAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6455064|gb|AW185747.1|AW185747
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATGTGCACTTCAGAAGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|298173936|gb|HO017272.1|HO017272
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|7590021|gb|AW705783.1|AW705783
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986449|gb|BE660557.1|BE660557
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|5770415|gb|AI973589.1|AI973589
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986446|gb|BE660554.1|BE660554
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCANAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|192301230|gb|FG990180.1|FG990180
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6455714|gb|AW186397.1|AW186397
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|163921421|gb|EH038959.1|EH038959
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATCTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|151395749|gb|EV265626.1|EV265626
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|298199322|gb|HO042685.1|HO042685
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAG                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6341667|gb|AW164491.1|AW164491
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGTAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTGTTTCAGCTGTAATGCAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|7589352|gb|AW705128.1|AW705128
EST:     GGTACTGTGATGGGTCATCGATTACTGGTGATGTGGAAGAAGTTGATCAG                         ACAACCAATTTGCACTTCAGAAGAGCAAGGATTTTCTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986448|gb|BE660556.1|BE660556
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAACAAGGATTTTTTCAGCTGTNATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986450|gb|BE660558.1|BE660558
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAACAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6668142|gb|AW279593.1|AW279593
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|5753593|gb|AI960880.1|AI960880
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|298163578|gb|HO012311.1|HO012311
EST:     GGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|7589167|gb|AW704947.1|AW704947
EST:     GTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAAGT-GATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGA
genomic: GTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAA-GTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGA
EST: gi|6070716|gb|AW100103.1|AW100103
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATNTGCACTTCAGAGGAGCAAGGATNNTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|9986445|gb|BE660553.1|BE660553
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6341492|gb|AW164316.1|AW164316
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|6724637|gb|AW309092.1|AW309092
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
EST: gi|5753417|gb|AI960704.1|AI960704
EST:     GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAA                         ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA
genomic: GGTACTGTGATGGGTCATCGTTTACTGGTGATGTGGAAGAAGTTGATCAAgtaagttttg ... tatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT
                ttctaat  putative branch site (score: 2)
                               tataatgtgatgtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttgcaaaattcaaaggaatttgaaattaagttacaaggaaaatattaagcatttgtaaattttatttttccaattttctttctaatgagatttgtataatgtgatgtatatatatcagACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA