1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaacatgctttgcaaagtttttttggcatcccatatgaaatgattggataagtcattatatcattgagacattgactattgatttgttgatcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAGTGTTCTCACTGTACTCAACAGCCTTAGTTGGACGGCTTGTTCAATTAG
species | Glycine max |
transcript | GLYMA16G15800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAG CTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAEST: gi|11274277|gb|BF324645.1|BF324645
genomic: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAGgtaaaccatc ... tcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACA
EST: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAG CTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAEST: gi|51337909|gb|CO981775.1|CO981775
genomic: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAGgtaaaccatc ... tcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACA
EST: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAG CTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAEST: gi|151403336|gb|EV273146.1|EV273146
genomic: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAGgtaaaccatc ... tcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACA
EST: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAG CTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACA
genomic: TAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAGgtaaaccatc ... tcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACA
ggataagtcattatatcattgagacattgactattgatttgttgatcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAGTGTTCTCACTGTACTCAACAGCCTTAGTTGGACGGCTTGTTCAATTAG
tcattttc CT-rich tract
attatatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacatgctttgcaaagtttttttggcatcccatatgaaatgattggataagtcattatatcattgagacattgactattgatttgttgatcattttcagCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAGTGTTCTCACTGTACTCAACAGCCTTAGTTGGACGGCTTGTTCAATTAG
- acatgct
- - - - - tgcaaag
- - - - - - - - - - - - -gcatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg