Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttcatagttctgctgctattttcgtattggtgaaaatcttagcaatattagttggcatgtattaaacttaaagatgctattggttattttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAAC

Basic information

species Glycine max
transcript GLYMA16G10880.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10880.2 (Glycine max), 3'ss of exon 5
lower sequence: PP1S73_243V6.1 (Physcomitrella patens), 3'ss of exon 7
-tttcttcatagttctgctgctattttcgtattggtgaaaatcttagcaatattagttggcatgtattaaacttaaagatgctattggttattttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAAC
 | | ||  ||  |      |||  |    || |   || ||  |    |  | |    |  || |  |   ||    ||   |  | || |||  | ||||| |||||||| || |||||||| || ||||| || || |||||||||||||||||  ||||||| ||||  || | |||  | ||||| ||| | || |
gtctatttctaagtacaggtctacatctaaatcgacaaatattatcagtaggtgataacgtttggacgaggttttttaat-tgaaggtttgtttgttgcagCCCACAGTTGCTGCTATTGAAGCTGGTAAAGATATTGCCTTGGCCAACAAAGAGACTTTGATTGCTGGAGGTCCATATGTGTTACCTCTGGCTAAGAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213592590|gb|DB961850.1|DB961850
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAG
EST: gi|209701659|gb|BW655880.1|BW655880
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120491370|gb|EH219537.1|EH219537
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|13562679|gb|BG550899.1|BG550899
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120530046|gb|EH258180.1|EH258180
EST:     TAGTTGGTTGTGCAGGATTAAAAGG                         CCAACAGTTGCCAGCAATTG
genomic: TAGTTGGTTGTGCAGGATTAAA-G-gtaacacaaa ... ttttcttcagCCAACAGTTGC-AGCAATTG
EST: gi|120530046|gb|EH258180.1|EH258180
EST:     TAGTTGGTTGTGCAGGATTAAAAGG                         CCAACAGTTGCCAGCAATTG
genomic: TAGTTGGTTGTGCAGGATTAAA-G-gtaacacaaa ... ttttcttcagCCAACAGTTGC-AGCAATTG
EST: gi|209716560|gb|BW658970.1|BW658970
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209698831|gb|BW675759.1|BW675759
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|20812913|gb|BQ297391.1|BQ297391
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|7028945|gb|AW458728.1|AW458728
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|192320068|gb|FK012598.1|FK012598
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209719503|gb|BW669166.1|BW669166
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAA
EST: gi|120495789|gb|EH223956.1|EH223956
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|12689187|gb|BG155523.1|BG155523
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGGAGCACGGGAA-GACAT
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA-GGGAAAGACAT
EST: gi|209709551|gb|BW661878.1|BW661878
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACAT
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACAT
EST: gi|213597900|gb|DB958281.1|DB958281
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAG
EST: gi|120529135|gb|EH257269.1|EH257269
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213589199|gb|DB957731.1|DB957731
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAG
EST: gi|120495138|gb|EH223305.1|EH223305
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209704652|gb|BW675874.1|BW675874
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213596009|gb|DB956017.1|DB956017
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA
EST: gi|6134837|gb|AW133230.1|AW133230
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCATGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209719034|gb|BW657926.1|BW657926
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213619650|gb|DB965596.1|DB965596
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAG
EST: gi|213608393|gb|DB970864.1|DB970864
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
EST: gi|31561875|gb|CD487713.1|CD487713
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAG
EST: gi|120529139|gb|EH257273.1|EH257273
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213597709|gb|DB962163.1|DB962163
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
EST: gi|209702328|gb|BW673255.1|BW673255
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|9204588|gb|BE330812.1|BE330812
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGATGCAGCAATAGAAGCAGGGAAAGACATAGCATTTGCCCACCAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213607170|gb|DB957090.1|DB957090
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGAC
EST: gi|120495374|gb|EH223541.1|EH223541
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|27425295|gb|CA936815.1|CA936815
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAG
EST: gi|213596499|gb|DB962059.1|DB962059
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209720966|gb|BW682445.1|BW682445
EST:     TGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAANG                         C-AACAGTTGCAGCAATTGAAGCA
genomic: TGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAA-Ggtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA
EST: gi|213606234|gb|DB961350.1|DB961350
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAA
EST: gi|120496299|gb|EH224466.1|EH224466
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGGCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209700150|gb|BW652994.1|BW652994
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     CCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|14205376|gb|BG839054.1|BG839054
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213587434|gb|DB967770.1|DB967770
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA
EST: gi|10844694|gb|BF070942.1|BF070942
EST:     GCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: GCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|20812650|gb|BQ297128.1|BQ297128
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGGTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213611921|gb|DB960709.1|DB960709
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA
EST: gi|213587625|gb|DB971348.1|DB971348
EST:     CTGATGCCACCACTGTAGTTACAG-CATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGG
EST: gi|213619789|gb|DB967411.1|DB967411
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAG
EST: gi|209721824|gb|BW666419.1|BW666419
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|6914782|gb|AW396312.1|AW396312
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     GCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: GCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213599256|gb|DB962293.1|DB962293
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213605380|gb|DB966929.1|DB966929
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAG
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAG
EST: gi|213608227|gb|DB970824.1|DB970824
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|209713006|gb|BW684300.1|BW684300
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120531755|gb|EH259888.1|EH259888
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120530531|gb|EH258664.1|EH258664
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCCAATTTGAAGCAGGGAAAGACATAGCATTTGGCCAAC
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGC-AATT-GAAGCAGGGAAAGACATAGCATT-GGCCAAC
EST: gi|213608088|gb|DB963032.1|DB963032
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|120494206|gb|EH222373.1|EH222373
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213597769|gb|DB960326.1|DB960326
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCA
EST: gi|213594299|gb|DB969977.1|DB969977
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAA
EST: gi|120534238|gb|EH262371.1|EH262371
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCANGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
EST: gi|213597908|gb|DB958289.1|DB958289
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAA
EST: gi|20813349|gb|BQ297827.1|BQ297827
EST:     CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAG                         CCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA
genomic: CTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGgtaacacaaa ... ttttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatattagttggcatgtattaaacttaaagatgctattggttattttcttcagCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAAC
                                          ttattttcttc  CT-rich tract
               atgtattaaacttaaa  TA-rich tract