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...gtaaaaagtggcaaatcgcgtacacatagctggtactatatctggtacaattacaaagaaaaataatttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGACTATGGTTTAATTACACTGTTAGCAACAGATGATGTCTCGGGTCTTCA
species | Glycine max |
transcript | GLYMA16G08470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGEST: gi|151412168|gb|EV281980.1|EV281980
genomic: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAGgtattgaatc ... tttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTG
EST: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGEST: gi|254340856|gb|GR854584.1|GR854584
genomic: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAGgtattgaatc ... tttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTG
EST: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCCGGATCCCTTGAEST: gi|151410428|gb|EV280243.1|EV280243
genomic: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAGgtattgaatc ... tttcatgaagGTCAAGTTTC-GGATCCCTTGA
EST: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGEST: gi|58024217|gb|CX710958.1|CX710958
genomic: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAGgtattgaatc ... tttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTG
EST: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAG GTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTG
genomic: AGAAATGCTTGGAGAGCCCATTGCAACTCTGCGTTTGCTGCACTATGAAGgtattgaatc ... tttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTG
tacaattacaaagaaaaataatttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGACTATGGTTTAATTACACTGTTAGCAACAGATGATGTCTCGGGTCTTCA
ttcatttttgtttc CT-rich tract
ttacaaagaaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagtggcaaatcgcgtacacatagctggtactatatctggtacaattacaaagaaaaataatttatacaattgtattcatttttgtttcatgaagGTCAAGTTTCGGATCCCTTGAAAGGATTATATGGAGCTGGAGCTCATACTGACTATGGTTTAATTACACTGTTAGCAACAGATGATGTCTCGGGTCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG