Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttattttgataattgcaccagtttattttgtacatgtccactacagaattggtcatgtgcatacacatgttactgaactgaagctgttttctgagatgtagGTTGAGTCATATTTGCGAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA

Basic information

species Glycine max
transcript GLYMA16G08320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttattttgataattgcaccagtttattttgtacatgtccactacagaattggtcatgtgcatacacatgttactgaactga-agctgttttctga----gatgtagGTTGAGTCATATTTGCGAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA
          ||    ||  || ||   |  ||| ||| | | |  | |    || ||    |  ||    |  ||| |    |   |  | |||||||     | || |||| || || ||||| || || ||||| ||||||||||||||||| ||||||||||| 
----------ttctccatctcaacatcctgatttctacttattc-ttccttcttttgtgccttaaatgggaactttattattttctcattttttttctggtttggctgcagGTGGAATCGTATTTACGTATCATTGGAGAGCCAAAGCTTCCGTCTGCATTTCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattggtcatgtgcatacacatgttactgaactgaagctgttttctgagatgtagGTTGAGTCATATTTGCGAATTATTGGGGAGCCAAAGCTTCCGTCAGCATTTCTTCAA
                                     ctgttttct  CT-rich tract