1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataatcataatttgacatgtgtttatcactaaatgtgctgctgtttttcttggagtatacccaaggattcatgatacaaacatttactctactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAACGATCGACCCAATTTTAGTCAAA
species | Glycine max |
transcript | GLYMA16G07490.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTNTNAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAG AATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGEST: gi|209728949|gb|BW655003.1|BW655003
genomic: CTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
EST: TTTTGAAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAG AEST: gi|209728949|gb|BW655003.1|BW655003
genomic: TTTTG-AAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcag-
EST: TTTTGAAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAG AEST: gi|9203986|gb|BE330210.1|BE330210
genomic: TTTTG-AAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcag-
EST: CTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAG AATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
genomic: CTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
tttcttggagtatacccaaggattcatgatacaaacatttactctactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAACGATCGACCCAATTTTAGTCAAA
ctctact CT-rich tract
aaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatcataatttgacatgtgtttatcactaaatgtgctgctgtttttcttggagtatacccaaggattcatgatacaaacatttactctactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAACGATCGACCCAATTTTAGTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - acatgtg
- - - - - - - - - - - - - - - - -tgtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacat