1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttgtctttactttttcttttacattttgtggttcctttttattatccagaaatctaatactgattgtactgatatggctgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
species | Glycine max |
transcript | GLYMA16G06850.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACCTGTTGTTTGTTGAAAAACCTTTTTGGTAAEST: gi|16278453|gb|BI942912.1|BI942912
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTT-GTTGAGAAACCTTTT-GGTAA
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGCGTTGTTGTTGAGAAAACCTTTTGGTAAGEST: gi|192310375|gb|FK002255.1|FK002255
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAG-AAACCTTTTGGTAAG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|11273943|gb|BF324331.1|BF324331
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTGGTTGCATGAATAAAT CTGATCTTGGTG-ATGGACACGTGGTGGTGT-GAGAAACCTTTTGGEST: gi|16348194|gb|BI973789.1|BI973789
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|254331186|gb|GR843305.1|GR843305
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|9986040|gb|BE660148.1|BE660148
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGG
EST: GTATATCCATCAAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACEST: gi|16348742|gb|BI974337.1|BI974337
genomic: GTATATCCATCA-GTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACAC
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|37995559|gb|CF807148.1|CF807148
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTEST: gi|15663680|gb|BI701051.1|BI701051
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTT
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGGTGTTGA
genomic: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGA
ccagaaatctaatactgattgtactgatatggctgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
tactgat putative branch site (score: 2)
ctgcatctgcttcctt putative PPT
aatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtctttactttttcttttacattttgtggttcctttttattatccagaaatctaatactgattgtactgatatggctgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA