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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtggatgttgttatgactggtatagttttcaaatatagtatgttctatttctttgctgatctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG

Basic information

species Glycine max
transcript GLYMA16G05470.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 5
----------------------------------gtgtgtggatgttgttatgactggtatagttttcaaatata---gtatgttctatttctttgctgatctact-tgactatttc---------------agCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                                       |   | ||||| |   |   |    |   ||||      ||||| | |  |  |||| |  || ||| | | || ||                ||||||||||| ||||||||||||||  |||||||||| ||||| || || || |||||| || ||   || ||||||||| ||||| | ||||| || || 
gtagattgcatgccactgagtttttggctttaagccaattctttcttgttttatttcaaaggactcagaaatgcgagggtatggtttcatcttttgttagtcaactctaattagtttgttttccttctgtatagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCACATCAGAACATCTAGTGACACTCCTTGCAGTTGTTCCTAAGTACTCTCAA

upper sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 5
---------------gtgtgtggatgttgttatgactggtatagtt--ttcaaatatagtatgttct--atttctttgctgatctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                | | || |         |   || | ||||   |||| |      |||| |  | |  || | |  | |  |   || |  |||||||||||| ||||||||||||||  |||||||||| ||||| || ||    |||||  || ||   || || ||||| |||||| | ||||| || || 
tcaattcctttgttgttttatgcaaagcaagtaggaaggcagagttaggtcaactgcttcttgttatgcactgattagtttgtgttttcttctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGCTCAGAGCATCTAGTAACACTTCTTGCTATTGTTCCAAAGTACTCCCAA

upper sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 5
----------gtgtgtggatgttgttatgactggtatagttttcaaatatagtatgttctatttctttgctgatctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
          ||       ||||  || |||    |   ||||   || || | || | | |||  |    || ||  |||  |  |||||| |||| || ||||||||||||||| | ||||| || ||||||||| |  | |||||| |||||   || || |||||||||||| |||||||||| |||
gtataccttggttgaaatctgtttgtaggacaaacaagatttt---atttactgtgatttcttttctgatcgacctctttgcttgcttcagCCTAGCTGTTCGTGATCTTTCCAACCTAGTAAAGCCAGAGGACATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716470|gb|BW653884.1|BW653884
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|15814086|gb|BI786361.1|BI786361
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|209711508|gb|BW681444.1|BW681444
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|213602669|gb|DB956605.1|DB956605
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|298191152|gb|HO038631.1|HO038631
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGAT
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGAT
EST: gi|16105980|gb|BI893720.1|BI893720
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|213620335|gb|DB961480.1|DB961480
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|213587989|gb|DB957448.1|DB957448
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCG
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCG
EST: gi|19452653|gb|BM954063.1|BM954063
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|213602677|gb|DB956613.1|DB956613
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
EST: gi|151393069|gb|EV262944.1|EV262944
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGgtgtgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttcaaatatagtatgttctatttctttgctgatctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                                              ctatttc  CT-rich tract
     ttcaaatatagtat  TA-rich tract