1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacttcaatcaattatgaacatattattgccttgctttcatttagagaaagttcagcaatattcagattggtttgggttatctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAATCTCGCAACGGAAAACAGAGTTAATAGGAGAAAATGAAAAGCCTTCAT
species | Glycine max |
transcript | GLYMA16G05140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAG GCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAEST: gi|26058540|gb|CA801454.1|CA801454
genomic: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgtaacttcaa ... tctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
EST: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAG GCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAEST: gi|11413772|gb|BF425783.1|BF425783
genomic: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgtaacttcaa ... tctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
EST: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAG GCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAEST: gi|19934822|gb|BQ079852.1|BQ079852
genomic: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgtaacttcaa ... tctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
EST: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAG GCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAEST: gi|23056166|gb|BU577706.1|BU577706
genomic: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgtaacttcaa ... tctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
EST: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAG GCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
genomic: CAGAAACATGCTATTATACATCAGTTTTTGACTTGTTAAAGCAGCAAGAGgtaacttcaa ... tctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACA
tttcatttagagaaagttcagcaatattcagattggtttgggttatctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAATCTCGCAACGGAAAACAGAGTTAATAGGAGAAAATGAAAAGCCTTCAT
ttatctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcaatcaattatgaacatattattgccttgctttcatttagagaaagttcagcaatattcagattggtttgggttatctattacagGCTGAGGAAAATAAATTGGCATTAACCTCTTTGTATGCATTAGAGTCAACAATCTCGCAACGGAAAACAGAGTTAATAGGAGAAAATGAAAAGCCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA