1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggtttgtgtctacataagagtttctcaaaaagactggtggaaaagtattcattatgacttatgcatgccctcgctaattaactaacatttttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCGGTTATAATG
species | Glycine max |
transcript | GLYMA16G04760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAG TTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCACEST: gi|10845170|gb|BF068331.1|BF068331
genomic: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAGgtttctttct ... tttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCAC
EST: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAG TTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCACEST: gi|8403388|gb|BE059022.1|BE059022
genomic: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAGgtttctttct ... tttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCAC
EST: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAG TTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCAC
genomic: ATAAAGACTCTTGTACTTAATGGAAAAACTTATGACCTCTATGTTCACAGgtttctttct ... tttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCAC
gtattcattatgacttatgcatgccctcgctaattaactaacatttttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCGGTTATAATG
aactaac putative branch site (score: 1)
catttttctttc CT-rich tract
taattaactaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtttgtgtctacataagagtttctcaaaaagactggtggaaaagtattcattatgacttatgcatgccctcgctaattaactaacatttttctttcagTTACTTGCACTTTGGTAAAGAAGCATCTCGTGCGGAGATGTTGAAGGTCACTGGTGATTCAGCTAACCCTTGCATTTTAGCCGGTTATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- gtttgtg
- - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - -tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca