Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtatttgtatttggttatatgctaattgtatttttgataaaaaaaataatctattatctgattagcatataagtcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAACAAATCAACTTCAGCGAATAATCAGAACTGGGCGTACAGGTCACTGGCTC

Basic information

species Glycine max
transcript GLYMA16G03690.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03690.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G10760.1 (Arabidopsis thaliana), 3'ss of exon 4
gtattgtatttgtatttggttatatgctaattgtatttttgataaaaaaaataatctattatctgattagcatataagtcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAACAAATCAACTTCAGCGAATAATCAGAACTGGGCGTACAGGTCACTGGCTC
                                          ||   | || |||||   |     || |  |  | ||   ||||||      | |||  ||   |||| | |       | ||   |  || ||||| ||||||||||| || || || || |||||||| ||||| || |||||||||||||| || || ||  |||| ||  | |||||||||||||||
-----------------------------------------gtacttagaaaaatct-caacaaattttgtgttcatgt---gcttttc----cactcta-atggagttttttt-------tttttttttaagTTTGGAGCTTTGGGGATACAAGCGAGTGGAAGAGATCATATGGGTAAAGACAAATCAACTTCAACGTATTATTCGAACAGGAAGAACAGGTCACTGGCTC

upper sequence: GLYMA16G03690.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g02400.t01 (Vitis vinifera), 3'ss of exon 4
gtattgtatttgtatttggttatatgctaattgtatttttgataaaaaaaataatctattatctgatta-gcatataagtcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAACAAATCAACTTCAGCGAATAATCAGAACTGGGCGTACAGGTCACTGGCTC
                          ||||||  || ||     |      ||      |   || ||  ||  | ||   ||||     ||  | |     ||    ||||| |       || | | |  ||  | ||| | |||||||| || |||||||| || ||||| |||||||| || ||||||||||| |||||||| ||||| |||||||| || || ||||| 
--------------------------ctaattccatattcacctacttgcctacatgcctgcttgcttgtgctcacaaactttgccaaaattggtct--cacatgcattttctgtg------tgctgcttgtagTCTAGAATTGTGGGGATACAAGCGTGTTGAAGAAATCATCTGGGTCAAGACTAATCAACTTCAACGAATAATTAGAACAGGGCGTACTGGCCATTGGCTT

upper sequence: GLYMA16G03690.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S249_97V6.1 (Physcomitrella patens), 3'ss of exon 5
gtattgtatttgtatttggttatatgctaattgtatttttgataaaaaaaataatctattatctgattagcatataagtcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAACAAATCAACTTCAGCGAATAATCAGAACTGGGCGTACAGGTCACTGGCTC
                        |  | || ||   |||| |  | | | | || |    |   ||| |  || | ||  ||| |||  |    |     || |   |||| ||     ||  | || ||||| | ||  | ||||| || ||| |  | || || ||||| ||||||||||| ||||| ||||||||||| ||| | || ||||| |||||||| ||||| 
-----------------------gtttttatagtccgtttggtgcataca-tgatgtcagcttgaatttgtcta-acgtagtgcgtttact----tcgaacatgtccattctgtaa----attgtgcaaccagCCTTGAGTTATGGGGCTACAAAAGAATGGAAGAAATCATCTGGGTCAAAACCAATCAGCTTCAGCGAATTATCCGGACAGGGCGAACAGGTCATTGGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335664|gb|CO979530.1|CO979530
EST:     CTTATTTTTCTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATG                         CTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
genomic: CTTATTTTTCTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATGgtattgtatt ... ttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
EST: gi|51341858|gb|CO983175.1|CO983175
EST:     CTTATTTTTCTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATG                         CTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
genomic: CTTATTTTTCTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATGgtattgtatt ... ttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
EST: gi|151403265|gb|EV273075.1|EV273075
EST:     CTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATG                         CTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
genomic: CTATGGGTCACTGGACGTGCGATGGAACTTGGACGGGAATGgtattgtatt ... ttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgcttttgttaatattctgtatttggtttctatacccatatgttccatccagCTTGGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAACAAATCAACTTCAGCGAATAATCAGAACTGGGCGTACAGGTCACTGGCTC
         tgttaat  putative branch site (score: 3)
                                             ttccatcc  putative PPT
      ttttgttaatattctg  TA-rich tract