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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaacttagaaaccttcaccaacacactcaacagttttgagattgttcattttatacttatctatgcagttctttctctagtttcccctaactgtggaagttggcattgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTCTTA

Basic information

species Glycine max
transcript GLYMA16G03650.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31459211|gb|CD401239.1|CD401239
EST:     AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|31475026|gb|CD417054.1|CD417054
EST:     TACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: TACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|298178136|gb|HO027519.1|HO027519
EST:     AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|6747050|gb|AW317506.1|AW317506
EST:     AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|31472400|gb|CD414428.1|CD414428
EST:     AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTTAATCTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|254335324|gb|GR846821.1|GR846821
EST:     AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAG                         GTT-ATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCACAAGGAGAGgttagaactt ... attgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgcagttctttctctagtttcccctaactgtggaagttggcattgttgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTCTTA
                         ccctaac  putative branch site (score: 2)