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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaaaagatggactagattatacatgcataagttcactttgctttatctttttctcatttccctgcaatattctttaacactatttgtttgcagtgcagCCAACAACCTACCTATGGGATATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTATATCAAGTTG

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02860.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 5
-cttaaaagatggac-tagattatacatgcataagttcactttgctttatctttttctcatttccctgcaatattctttaacactatttgtttgcagtgcagCCAACAACCTACCTATGGGATATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTATATCAAGTTG
   |    ||||  |    |||  | |||  | | |   | ||    |||| |||| | ||||   | || |||| ||||| |||  |||||| | ||||||  |||||| |||| ||||||||||| || || || || ||||| || || ||  | ||||||||||||||||| |||||||||||||| ||||| || ||
ctcttggtgatgatcaccaatttaatatg-gttattaggcattttggtatcattttatgatttttat-cattattatttaagactgcttgttttcggtgcagTTAACAACTTACCAATGGGATATCCCGTTCTTCAACAACCTCCTATCCCGGCTCCTGGTCAACCTCATATTGATTCCATGGGTTGTGGAATATCCAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996561|gb|BM085933.1|BM085933
EST:     CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG
EST: gi|7692308|gb|AW760418.1|AW760418
EST:     CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG
EST: gi|4284582|gb|AI440799.1|AI440799
EST:     CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCAATGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttttctcatttccctgcaatattctttaacactatttgtttgcagtgcagCCAACAACCTACCTATGGGATATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTATATCAAGTTG
                            ctttaac  putative branch site (score: 3)
                                       tttgttt  putative PPT
                      aatattctttaaca  TA-rich tract