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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatatattgatctgtactttcttatccatatgttatattcgtcatgtatgtctaattctgaaataagaataatgtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCTTCCAATACATACCTGGTTGGCCATTCTGTTACCCTTG

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 6
------------gtaagctatatattgatctgtactttcttatccatatgttatattcgtcatgtatgtctaattctga--aataagaataatgtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCTTCCAATACATACCTGGTTGGCCATTCTGTTACCCTTG
             ||    ||  ||  || | |||  | ||        |||    || |  ||  ||| |||| ||     || | | |  | ||  |  || ||||||||| ||||| | ||||||||||||||||||| |  || |||||||| ||||||||||| || || | |||||| || |||||||| ||||| |
attttaatgttcttacatcatgaatgcat-tctaccattttgctttccagtttagctcct--tgattgtttaatccttcctgatcatagttttctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332370|gb|FK026035.1|FK026035
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213607318|gb|DB965148.1|DB965148
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|207755375|gb|GD729410.1|GD729410
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|209699300|gb|BW670264.1|BW670264
EST:     TTATGAAATTATACCTGCCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|208191608|gb|GD994580.1|GD994580
EST:     ATTGTAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: A-TG-AAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|254348583|gb|GR852262.1|GR852262
EST:     AAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: AAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213587829|gb|DB959653.1|DB959653
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|192322478|gb|FK014959.1|FK014959
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|192316481|gb|FK006772.1|FK006772
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213615347|gb|DB963541.1|DB963541
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|17023211|gb|BM094245.1|BM094245
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213617072|gb|DB961552.1|DB961552
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|209714829|gb|BW674315.1|BW674315
EST:     TTATGAAATTATACCTGCCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213596059|gb|DB966306.1|DB966306
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|254343639|gb|GR857395.1|GR857395
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|209706650|gb|BW676159.1|BW676159
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAAAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|208171646|gb|GD967157.1|GD967157
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213600558|gb|DB960106.1|DB960106
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|192329460|gb|FK021858.1|FK021858
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|213611109|gb|DB972697.1|DB972697
EST:     TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctata ... gtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttatattcgtcatgtatgtctaattctgaaataagaataatgtgaatgaagGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCTTCCAATACATACCTGGTTGGCCATTCTGTTACCCTTG
                     gtctaat  putative branch site (score: 3)
                        taattctgaaataaga  TA-rich tract