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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatctatgcctaaaacttatctttttaattatataaatatttgccatatctttctatgctagttgtggaatcatattacttgttgaatatttagGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAAT

Basic information

species Glycine max
transcript GLYMA15G42460.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42460.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G32850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtcatctatgcctaaaacttatctttttaattatataaatatttgccatatctttctatgctagttgtggaatcatattacttgttgaatatt--tagGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAAT
             |  |   |     |||||| | | | |  | |||    || | |||   ||  | |||       |  ||  || || || |    ||||| |||||||||||| | ||||| |||||||| ||||| | ||| |||||||| ||||||||||| ||| ||||||| || || || || ||||| ||||
-------------gtatgtgatgacactttttcaatctctccagattgctaatctatttggttgaaacttgaaagtaaaggtttgtttttaaaaaaaaatagGCTCTTGGATGTCTCTTGTTTCGGATATGCTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAAATCTTAAACGGGAATTATCGTATTCCAGAAT

upper sequence: GLYMA15G42460.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtcatctatgcctaaaacttatctttttaat-tatataaatatttgccat------atctttctatgctagttg-tggaatcatattacttgttgaatattt----agGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAAT
||||||||  ||| | | |   || |    | | | |   | |  |||||| ||      |  ||||| ||||  ||  |  || || |        |  || |||    |||| ||||| || ||||| |||||||||||||||||||||  ||| |||||||| ||||||||| | ||| ||||||||||||||||||||||||| ||||
gtaagtcagttatactttatttttgttcaatgagtctgggttatgatttgctattcaagaagttttctgtgctttttaatacaaccaaaacctgaaattcatctttttgcagGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGATGGTGAATCAAAGTTACAAATCTTAAATGGAAACTACCGCATTCCAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692003|gb|AW760119.1|AW760119
EST:     TGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGG                         GCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGAT
genomic: TGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGGgtaagtcatc ... gaatatttagGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccatatctttctatgctagttgtggaatcatattacttgttgaatatttagGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAAT
                                 atattacttgttgaat  TA-rich tract