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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaatgggtgaagaattattgtttcttttctttcttatgtatgttccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG

Basic information

species Glycine max
transcript GLYMA15G41690.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41690.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g07760.2 (Oryza sativa), 3'ss of exon 4
gtacacaatgggtgaagaattattgtttcttttctttcttatgtatgttccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG
        |   |    || || ||   ||  | ||  |||  |    |   |  ||  |     ||| ||| |    ||   |    || | ||||   ||| | |  ||||| ||  | |||||||| |     ||||| || ||||| ||||||||||| ||||| |||||  || |||||||||||||  ||||||| |
-------gtactttctaaaatactgcg-ctgatattcgttagttggaatatgtgattctaaagccttactggagactcattggttgctataaatatt---cagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTATATATGGTGATATTATTCCCCCAACTCTATCTGATCGTAGATTATTGG

upper sequence: GLYMA15G41690.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 5
gtacacaatgggtgaagaattattgtttcttttctttcttatgtatgttccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG
          |     || ||||    ||   |  |  |  |  ||| |    | ||  |  |  || |||| ||   ||   | |  |   || | || ||| | || ||||| ||  | || || || | |   || ||||| ||||| || |||||||| |||||||||||| || || ||||||||||  |||| || |
----------gtacttgatttatatcatccactgatgttagttgatggttgtgattttgaggttctt-ttggggcctgattggtttgtacttctctgtt-cagGTCAATTATGGTGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGG

upper sequence: GLYMA15G41690.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 3'ss of exon 5
----------gtacacaatgggtgaagaattat------tgtttcttttctttcttatgtatgttccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG
           |  ||  ||  | |||||   |      |  |  || | |  |  || | | ||| ||| |||   ||  || |  |     | |     |  |     | ||||||| | ||||||||||||| ||||||||||||  | || ||||||||||||||||||||||| |||||||||||  |||| ||| ||||||| ||  |  |||
gtatgccattctcaactttgctttaagaaacttaaggagtagtaattgtatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596335|gb|DB960236.1|DB960236
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCT-AGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|213614121|gb|DB964893.1|DB964893
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCT-AGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|209725352|gb|BW651520.1|BW651520
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCT-AGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|209708413|gb|BW665388.1|BW665388
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|15337286|gb|BI497942.1|BI497942
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|298188148|gb|HO034841.1|HO034841
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGGGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
EST: gi|151395152|gb|EV265023.1|EV265023
EST:     AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAG                         ATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT
genomic: AGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTTGGTGAGgtacacaatg ... tattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctagttgaatttggttattggtgcagtatatatgtaaatgactattttgcagATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTG
                                            ctatttt  CT-rich tract
                             tatatatgtaaatgac  TA-rich tract