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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttccagtggtcacactcacttccttttcctttcccttttgtcagtggtaacgttaaattggtaatgcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG

Basic information

species Glycine max
transcript GLYMA15G37190.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g59700.1 (Oryza sativa), 3'ss of exon 5
-------------------------------------------------------------------gtaactttccagtggtcacactc------acttccttttcctttcccttttgtcagtggtaacgttaaattggtaatgcccttttcc------tattgatgaa--tgttctcttct-------tgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                                                                   | ||  |||  |  |    |||         ||   |||  ||  |  |     | | | ||  |  | ||     |  | |||         ||||  ||||  | || ||||||       |||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| || ||||||
gtacttcttttgataactgctctattttttttctgtgtggctgtagattttttatccagctggttttgcaatcttcgggctggggtactgttttgggattgtattttgttctctatacaaaattagcaatatccagttccaggtttcttttcagttacagtattcctgaaaatattatcttctattcttatgcttgcagTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGG

upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G057329_T01 (Zea mays), 3'ss of exon 5
---------------------------------gtaactttccagt-ggtcacactcacttccttt-------tcctttcccttttgtcagtggt-------aacgttaaattggta-atgcccttttcctat------------------tgatgaatgttct----cttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                                  |||      | |  |||||||||| || | ||        |  |||| |   | ||||  |       |||   ||||   || ||  | || |  ||                   |||||||     |      |  ||||||||||||||||||||||||||||| || |||||||||||||| || ||||| || ||||||
gtacgttcgccttctctaaaattgcatgtagccttaatgcctgactcagtcacactcagttgccttggcaatgcctattccttcaagccagtcatgtttaagaacaaaaaatgactagatatctttcttgtacaccctgttttagagtacatgatgaaaagcttacactcttgtgcttgcagTTCTTTATAACATGTGCAAAGTGTGACTGGCTTGACAACAAACATGTGGTATTTGGG

upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G38730.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------------------------gtaactttccag-tggtcacactcacttccttttcctttcccttttgtcagtggtaacgttaaattggtaat-gcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                               ||||     ||  | | ||||   |  |   |  |     | ||  |    || |  | | |  ||   | |    || |   |||| ||     ||   || |   ||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||
gtaatttcagtctcattatatttgtacttctgtaatgagacaaattgacacaaaaatgtagataacgaaagcattgagcatttgatgccttcaggttatcatttaggctataattattaatcgcctttgctttttgcattgcagTTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGG

upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 3'ss of exon 4
gtaactttccagtggtcacactcacttccttttcctttcccttttgtcagtggtaacg-ttaaattggtaatgcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
          | |||| | | |   |   | | ||||       | | | || |   |  |   ||   |||    ||  | |||| ||       ||  | ||||| |||||||||||| |||||  | ||||| |||||||||||||| |||||||| || || |||
---------tattggt-agatttgatcattgtaccttaaaaagattttaatgtttttgacttggttataaatttgtttaccatattcatttgaag-ctacttttgct-gcagTTCTTTATCACATGCTCGAAATGTGACTGGCTTGACAACAAGCATGTGGTATTCGGG

upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ31848 (Selaginella moellendorffii), 3'ss of exon 5
gtaactttccagtggtcacactcacttccttttcctttcccttttgtcagtggtaacgttaaattggtaatgcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                                            |     | || |  ||   | ||| ||   || | | ||  || || |||| | |       || ||||||||||||| || || |||||||||||||| ||||| |||||||| || ||||| 
-------------------------------------------gtactttttgtgatcttctgtgggtgat---ctatacttacggaaga-tgttgttt------gtgtagTTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGA

upper sequence: GLYMA15G37190.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ38013 (Selaginella moellendorffii), 3'ss of exon 5
gtaactttccagtggtcacactcacttccttttcctttcccttttgtcagtggtaacgttaaattggtaatgcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                                            ||    | || |  ||    ||   |||  || | | ||  || ||  ||| | |       || ||||||||||||| || || |||||||||||||| ||||| |||||||| || ||||| 
-------------------------------------------gtgctttttgtgatctt---ctgtggatgatctatacttacggaaga-cgttgttt------gtgtagTTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttaaattggtaatgcccttttcctattgatgaatgttctcttcttgcttgcagTTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGG
                         tattgat  putative branch site (score: 3)
                                   tgttctcttcttgctt  putative PPT
                         tattgat  TA-rich tract