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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctagctcattgtcatctgttactttatttaattatgtttttgacccatttctagttttgcattacctgatctttgagagttatttcagGTTCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTGGGGAATATGATACAGACTCTCTCTAGCTG

Basic information

species Glycine max
transcript GLYMA15G35760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G35760.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S89_179V6.1 (Physcomitrella patens), 3'ss of exon 5
-------gtcctagctcattgtcat--ctgttactttatttaattatgtttttgacccatttctagttttgcattacctgatctttgagagttatt---tcagGTTCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTGGGGAATATGATACAGACTCTCTCTAGCTG
        || |   |       |    | |||     ||  |  |  ||||||   |      ||  | | ||| ||||||   | |   || |    ||||||||||||||| ||||| ||||||||||| || |  |||||||  ||||||||        |  | | |||
gtgggttttcttgatttcccacaaggattcttatgaccttggagcacttttttgggtctcaatcaggatcg-atttcctgatggctcatgtttgtgggatcagGTTCAATTTGCCGCTGGAAGGGACTTGAGACCGGGCCAACTGGATAATATGATCGCAGTATTGGCAAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttttgacccatttctagttttgcattacctgatctttgagagttatttcagGTTCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTGGGGAATATGATACAGACTCTCTCTAGCTG
                                              ttatttc  CT-rich tract
                                            agttattt  TA-rich tract