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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctgtttttctggaaatggacaaaagaacaaatgcatgtaatagtacaaaaaacatgggtgcaaatattagtattcatgaagaaaataaaagattcataaactacttttttgctcttgaatgggattttaaaatttggaatatttttgttcttgctgctataccacaacagaggttttttgatagGTTGGCTTCGAAGTTCGACTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAA

Basic information

species Glycine max
transcript GLYMA15G29910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G29910.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g53760.1 (Oryza sativa), 3'ss of exon 6
gtaagccctgtttttctggaaatggacaaaagaacaaatgcatgtaatagtacaaaaaacatgggtgcaaatattagtattcatgaagaaaataaaagattcataaactacttttttgctcttgaatgggattttaaaatttggaatattt-ttgttcttgctgctataccacaacagaggttttttgatagGTTGGCTTCGAAGTTCGACTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAA
                                                             |  |   |||  ||  | ||   |    | ||   |   |     |   ||  | || |   | |    || |    | | |     | | ||||  ||  |  ||||| |    ||   |||||| ||||||||||| | |||||||| | || ||||| ||||||||| |||| ||| |||| || || || ||||||||||||||  || | ||| | |||||  |||
------------------------------------------------------------gtaag-ataaagctttcttttttcgtctcatatggtaccatgtcccatctctaatatgattaaggacaaaatgtctttactagattcttctattgtatttttttgtatacaatgctagt--ttttttaatagGTTGGCTACAAAGTTCGATTGGAGGGAATCAAAGGAAAAGACACACATTTGCTTTTCTGCACAAGTGGTATATTACTACGACGATTGCTCAGTGACAGAA

upper sequence: GLYMA15G29910.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G04895.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagccctgtttttctggaaatggacaaaagaacaaatgcatgtaatagtacaaaaaacatgggtgcaaatattagtattcatgaagaaaataaaagattcataaactacttttttgctcttg-----aatgggattttaaaatttggaatatttttgttcttgctgctataccacaacagaggttttttgatagGTTGGCTTCGAAGTTCGACTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAA
                                                              |   || || ||   | | | | ||   |  |   |||||| || ||   |  || |||        | |   | |||   |   |     | ||| ||| ||     |||||  |||||||  |||  |||||||||| ||  ||||||| ||||||||||||| |||||| || ||||| || ||||||||||| ||||||||  | || ||| || || | |||||||| |
--------------------------------------------------------------gttagccaaaatccttgtccttcaattgagcatc-gattcaaaagctgtctgattactccaattaacactaatactttgttaaaagatgcttgtttattcatgacttcatacc-taacagagaatttccgatagGTTGGGTTTAAAGTTCGTCTAGAAGGAATGAGAGGAAAGAATACCCACCTTCTATTTTGTACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttggaatatttttgttcttgctgctataccacaacagaggttttttgatagGTTGGCTTCGAAGTTCGACTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAA
                                            tttttt  CT-rich tract
        aatatttttgttctt  TA-rich tract