Sequence
atgc intronic sequence ATGC exonic sequence...gcatactggcacacccatgttactctaatacatttcactatgaacttgagaaaaatatatttcaatatctaatttctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
Basic information
species | Glycine max |
transcript | GLYMA15G23150.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G23150.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G108115_T01 (Zea mays), 3'ss of exon 5
gcatactggcacacccatgttactctaatacatttcactatgaacttgagaaaaatatatttcaatatctaatttctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
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------gtatgtgaccagattatcctcctttgctt-attgtttattgtgccaagatgcata--attgttttgaccacttctaatgtaaaaatggtcacagTGGGGACAAAATCTTCCTTTGTTGTATGACCGCGTCCTGAAGTACCCAGAACGTGTCCAGAATCTGTACTTCACCTACCTGTTTGTTCTTCGGGCCGTGA
upper sequence: GLYMA15G23150.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G521844_T01 (Zea mays), 3'ss of exon 5
gcatactggcacacccatgttactctaatacatttcactatgaacttgagaaaaatatatttcaatatctaattt--ctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
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--------------gtatgtgaccgaattatcctccttcattattttttattgtgccaagtttcgtaattattttgaccacttctaatgtaaatggtcacagTGGGGACAAAATCTTTCTTTGCTGTATGACCGTGTCCTGAAGTACCCAGAACGTGTCCAGAATCTATACTTCACCTACCTGTTTGTTCTTCGAGCCGTGA
upper sequence: GLYMA15G23150.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g03950.t01 (Vitis vinifera), 3'ss of exon 5
---gcatactggcacacccatgttactctaatacatttcactatgaacttgagaaaaatatatttcaatatctaatttctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
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cttgtcctttctttttttcctggtatttcttgcattttttttattaatatgaagtctgttgatgaca-tatctaacaataattttttttctttgctgt--cagTGGGGTCAAAATCTCACATTGCTCTATGATAGAGTCATAAAATACCCAGACCGTGTCGGAAACTTGTACTTCACTTTTCTCTTTGTTCTTCGAGCTGCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814993|gb|BI787268.1|BI787268EST: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTG TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
EST:
gi|15815000|gb|BI787275.1|BI787275EST: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTG TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgagaaaaatatatttcaatatctaatttctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
atctaat putative branch site (score: 3)
tctaatttctttcttt CT-rich tract
aaaaatatatttcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatactggcacacccatgttactctaatacatttcactatgaacttgagaaaaatatatttcaatatctaatttctttctttcctttttattattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG