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gtaataaaacataaggttatggaaaatgctaagtggctcgttatctttttgtttacatgctgttgaaatatacatgatatttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
species | Glycine max |
transcript | GLYMA15G20400.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGEST: gi|11274682|gb|BF325019.1|BF325019
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
EST: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGEST: gi|27426194|gb|CA937714.1|CA937714
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
EST: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
gctcgttatctttttgtttacatgctgttgaaatatacatgatatttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
atttaat putative branch site (score: 4)
ttgaaatatacatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaacataaggttatggaaaatgctaagtggctcgttatctttttgtttacatgctgttgaaatatacatgatatttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA