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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagaatcctgcttttgaagttggttaatatgcttcacttatcttggtgttgttcaatccttttttggtaacttttattatattttgttgaactttctattagaactttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTGGATATCATTGTTTTTGATGTACTGCCTGCCTCAG

Basic information

species Glycine max
transcript GLYMA15G16270.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 5
gtatagaatcctgcttttgaagttggttaatatgcttcacttatcttggtgttgttcaatccttttttggtaacttttattatatt-ttgttgaactttc-tattagaactttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTGGATATCATTGTTTTTGATGTACTGCCTGCCTCAG
                             |  || ||| ||| | ||   ||  ||  ||  |   |  | |  | || || | || || ||  | |||| | |||  || ||| ||  ||| ||||  ||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||  || | |||||| | ||||| |||||||||||| | || ||||||||||
-----------------------------aagtgtttctctt-ttttatcgtcctttgatagtacgtctgcatttgtttttttgttcttcttacattttcattttatcacattcttgaatttttatg--cagGTGTGGGCTGTATTGAAACCTGGATTCTTGGCCTTGCTGGAAGATCCTTTTCATCCTCAGCCTTTAGATATTATTGTTTTTGATCTGCTACCTGCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattatattttgttgaactttctattagaactttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTGGATATCATTGTTTTTGATGTACTGCCTGCCTCAG
                                ctttcctgtctttat  CT-rich tract
     tatattttgttgaa  TA-rich tract