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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttatgaatcaactgcttctatttcacagcttgttttcatttatctcttctaaaaggggaagagggaaaaattgtattatttgctaaaatatgattttcttttatctagAGGGACTATGTGAAATGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTG

Basic information

species Glycine max
transcript GLYMA15G15920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g36170.1 (Oryza sativa), 3'ss of exon 4
gtactttttatgaatcaactgcttctatttcacagcttgttttcatttatctcttctaaaaggggaagagggaaaaattgtattatttgctaaaatatgattttcttttatctagAGGGACTATGTGAAATGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTG
                                     || |   | || ||| |  ||  |     | | |     ||  |    |||  | |||     ||||||||||| |||||||||||||| || |||||||| ||||| || |||||||||||    ||  | ||||| || ||||| ||||||||||| || || || || || ||||
------------------------------------gtgctaataattttct-taatatcacttccacatgtttggatcatg--gtttattgaaac----ttttcttttatttagAGGGACTATGTAAAGTGGAGAGGTGTGCTCTTCCTTCGGTTCCTGCCATCTTTAGTTGATGAGTCAGAGAAGATAAGGCATTTGGCAGACTTCCTTTTTG

upper sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G15890.1 (Arabidopsis thaliana), 3'ss of exon 6
gtactttttatgaatcaactgcttctatttcacagcttgttttcatttatctcttctaaaaggggaagagggaaaaattgtattatttgctaaaatatgattttcttttatctagAGGGACTATGTGAAATGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTG
                   |  | |||||   ||     | || || |     || ||||| |    ||    | |||      ||  ||  |    ||  |||  || ||  |||| ||||| ||||||||||||||||| || || ||||| |||||| | || || || || ||||| ||||||||| | |   | || || ||| | ||||
------------------gtattgctattctccacagattctttatcttctgtttttaaaaagtattgaattgacaatga----ataagc--aggcttg--ttttcttgattcagAGAGACTACGTGAAATGGAGAGGAGTTCTCTTCCTTCGATTCCTTCTATCGCTAGTGGATGAATCTGAAAAGATACGTCGACTTGCAGACTTTTTATTTG

upper sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 5
-gtactttttatgaatcaactgcttctatttcacagcttgttttcatttatctcttctaaaaggggaa-------gagggaaaaattgtattatttgctaaaatatgattttcttttatctagAGGGACTATGTGAAATGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTG
  |  ||| |||   |  |    |   ||||   |  || || ||   | |   || |  |||   ||       |  | |||  || || | ||   | ||   |    || |  | || |||||||||||||||| ||||||||||| || || || || |||||||| || |||||||| ||||||||| ||||||||| | | || ||||| |||||||
gtttgtttctatttctatagctttgtcatttatgatattattctcccatgttcatttttgaagatcaattaagcggcagcaaagtttttaatgttcctttaacctta---ttatcatgtccagAGGGACTATGTGAAGTGGAGAGGAGTACTCTTCCTCCGATTCCTTTTATCTCTTGTTGATGAATCAGAAGAGATAAGGCGGCTTGCAGATTTCCTCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggggaagagggaaaaattgtattatttgctaaaatatgattttcttttatctagAGGGACTATGTGAAATGGAGAGGAGTGCTATTTCTTCGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATAAGGCAGTTAGCGGATTTTCTCTTTG
                           tgctaaa  putative branch site (score: 2)
                                        ttttcttttatct  putative PPT
            aaaaattgtattattt  TA-rich tract