Sequence
atgc intronic sequence ATGC exonic sequencegtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattatctcattgtttgaaaagttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
Basic information
species | Glycine max |
transcript | GLYMA15G15310.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 5
gtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattatctcattgtttgaaaagttagaaaccta-atttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
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------------------------------------------------------------------------------------------tttcaacttacacaaatgattctattacagtagtattgtatcactgcatgctgatttttgttttcacatgccccctg-aattgacagtttt--cattcttcagGTTACTTTTGTTGAAGCTCTTGACCAGCTAATGCCTGGTTTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTCCTTATCAACCCTCGGAATATAGACT
upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G073774_T01 (Zea mays), 3'ss of exon 5
gtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattatctcattgtttgaaaagttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
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-----------------------------------------------------------------------------------------gctggatgaattctagaatgctccttagacatct-gttgcctgatgaatatgattgtt--ctcagttaattcacttgaatttactcaattcaaaattgggcagGTTACTTTTGTTGAAGCTCTTGACCAGCTGATGCCTGGATTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTTCTTATCAATCCTCGGAAAATTGACT
upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattatctcattgtttgaaaagttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
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------------------------------------------------------------------------------------ttttgtgtaaatagtagaaaataagattttaaggtaccaatctgttgg----tttttcgatttaaattgtagttactgatcgaaaacggaaacc----ttttgtgcagGTAACTTTTATAGAAGCACTGGATCAGCTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTAGCTCAGAGGGTTTTGATAAATCCAAGAAAGATTGACT
upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattat-ctcattgtttgaaaagttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
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---------------------------------------------------------------------------------------------tcgagcaaatgggcgatagctatattttgcttaaggtttgtgatgctctgcaactccaggaagtgaccaagctcaggggaactcttttttttttttacagGTAACTTTTATTGAGGCACTGGATCAACTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27426345|gb|CA937865.1|CA937865EST: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAG GTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
genomic: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAGgtagtacttc ... tactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
EST:
gi|23063995|gb|BU578768.1|BU578768EST: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAG GTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
genomic: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAGgtagtacttc ... tactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
EST:
gi|13562493|gb|BG550713.1|BG550713EST: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAG GTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
genomic: GTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAGgtagtacttc ... tactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
acctaat putative branch site (score: 3)
taataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtacttctcttctgatatatttttttttatcctttctcaattgtattttgttcatgagaagaactgacaatagttttccaatttttcttttatgacgtttgaaagttttttatattatctcattgtttgaaaagttagaaacctaatttgtgcagaagagatatagttggtaataatggtactctgcagGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG