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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaatttttagtattctttgaatttaaaatttctaatgatcatatcaaaacctgttaaatatatatacactaatatatgcatattgtttcttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG

Basic information

species Glycine max
transcript GLYMA15G14390.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761694|gb|GD734625.1|GD734625
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|193591019|gb|FK545536.1|FK545536
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|8669339|gb|BE190446.1|BE190446
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|15815178|gb|BI787453.1|BI787453
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|208184982|gb|GD984968.1|GD984968
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGG
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGG
EST: gi|192301718|gb|FG994412.1|FG994412
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGG-TACCC-AAATGA-GACACATGGCCTG-TGTA-CTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192304398|gb|FG996720.1|FG996720
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|193395746|gb|FK364819.1|FK364819
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGG-TACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|192312082|gb|FK003859.1|FK003859
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192302863|gb|FG998545.1|FG998545
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|151411049|gb|EV280860.1|EV280860
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGA
EST: gi|193359793|gb|FK328539.1|FK328539
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|193729006|gb|FK663868.1|FK663868
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|193464902|gb|FK430156.1|FK430156
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAA
EST: gi|193464022|gb|FK428324.1|FK428324
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGA
EST: gi|193378745|gb|FK344316.1|FK344316
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|22933208|gb|BU550347.1|BU550347
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192301719|gb|FG994413.1|FG994413
EST:     CCTTTATTCCCTGGGGACTTTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|208081860|gb|GD882918.1|GD882918
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|209726536|gb|BW658090.1|BW658090
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192304397|gb|FG996719.1|FG996719
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAA-TATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|214008217|gb|DB988548.1|DB988548
EST:     CATCT-GTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: C-TCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaacctgttaaatatatatacactaatatatgcatattgtttcttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG
                      cactaat  putative branch site (score: 2)
                                      ttgtttctt  putative PPT
         ttaaatatatatacac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctaatttttagtattctttgaatttaaaatttctaatgatcatatcaaaacctgttaaatatatatacactaatatatgcatattgtttcttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAATGGCCATCCAAG

- - - - - - - - - - - - - - - - - - - - - - -caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat