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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaatagacatttcagttcctcttatgactttcaatgttctataattttggttctgtatattggtatttatctagccagatttagctgatggttaattattttgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG

Basic information

species Glycine max
transcript GLYMA15G13910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13910.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G058584_T01 (Zea mays), 3'ss of exon 7
gtaagttgaatagacatttcagttcctcttatgactttcaatgttctataattttggttctgtatattggtatttatctagccagatttagctgatggt-taattattttgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                             ||||  |  |  |  || |    | |    ||| ||   | |  |||  |  |    |  ||||  |  | || ||  | | | | |||||||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | |||||||
----------------------------gtatgcttgcctctactcaaatcctctcaa-ctgaattaagattattaattcactgtttgaagcttttcatatagtttctctttctgccagCCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG

upper sequence: GLYMA15G13910.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G63890.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttgaatagacatttcagttcctcttatgactttcaatgttctataattttggttctgtatattggtatttatctagccaga--tttagctgatggttaattattttgta------taccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                               | | ||   ||||| |||| ||||| || |  || |   |  | || | |  | |   ||  ||  |  ||  |||   | ||      |  |||||||| |||||||| |||||||||||  |||||||||||| ||| |||| |  |||||| |  |  || |||
------------------------------gtaagttctcatgttttatacttttgcttgttcatttctcttgtaattttgtaataatcttgtcttctttttccttaccctatacttctctctcagCCTGCTCAAATTGCTGGATGTAAAACAGTTGTTCTTGCAACTCCACCAAGTAAGGATGGAAGCATTTGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811785|gb|BQ296263.1|BQ296263
EST:     TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCTGTT                         CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
genomic: TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaa ... tgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
EST: gi|254340468|gb|GR850770.1|GR850770
EST:     TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTT                         CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
genomic: TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaa ... tgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattggtatttatctagccagatttagctgatggttaattattttgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                                 ggttaat  putative branch site (score: 4)
                                       ttatttt  CT-rich tract
                                   ttaattattttgtata  TA-rich tract