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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcagGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGC

Basic information

species Glycine max
transcript GLYMA15G13640.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13640.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgt---gactgttgtttatgt-cagGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGC
                             |  | | ||        |      || ||| | ||||   ||||||| ||  | | ||   || |       |  |  ||||||||||||||||||||||||| |  || |||   || || |||||| | ||||||    ||||| |  | ||  ||||||| || || || || ||||
----------------------------gtaaagagtgcgatttgttacgttctggcttgtgtttataatcattagcttacgctagtcttgatttgaaaacaaatatagGTTGCTGAAATTCTCAAAGATCGTCCATCTTGGCTCCGAGATTGTCGAAGTGTGGATACTCTGAGTGTGATACCTGCTGGAAACGGTGGGACGATCGAGC

upper sequence: GLYMA15G13640.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcagGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGC
          |      |  |   || |||| ||  | ||| ||         ||  ||   |||  | | |  ||| ||||   || ||   | ||||   |||||||| ||||| ||||||||||| |  || |||| ||||||||| |||||| | ||||| |||||| || |||| || ||||||||||| || ||||| |
----------gtacttgtcctgacttgtttttactctattgtac---------tgcgttagttttggtgtaa--agtatgtg---gtaac--atcttta---cagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcagGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGC
       ttttcttta  TA-rich tract