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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG

Basic information

species Glycine max
transcript GLYMA15G13380.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 3'ss of exon 5
---gtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
    |  | | | |     ||| ||| |       |  || || | ||   |  ||   |   |         ||  ||| ||||||||||||||| | ||||||||||| || |||||| |  | |||||||||||||||||||| | |
gtatttatctgttttttcagataacctttgccacagcaatacattcttgatgcatttgtaacatttggacaactgggtttgtagGTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGG

upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G390374_T01 (Zea mays), 3'ss of exon 5
----------------------------gtagtttatatccatggattaccc-tctggt--tgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
                             ||  ||||   |||    ||  | | | ||  ||   ||   || | |      | |||||| ||    |   |  | | ||||||||||||||| | || ||||| ||||| |||||| | || |||||||||||||||||||| | |
gtaccgaggttaaatctgtctttcagggataccttatgcacatatgatatacatatagtcctgatcatctgatgtatag----taacacttggacatct---gagtatgtagGTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGG

upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 4
gtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
||| |   |||||||   ||    ||| ||    ||||  |||    | |    |   |  |  || | |    | | ||||||||||||||  |||| || || || ||||| ||| | || ||||||||||||||||||||||||
gtactccctatccatatttttgtatctagtacaatattgcataacaaattcaataagatgagtcccgtttctcttctatagGTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAG                         GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA
genomic: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttata ... gtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
                               ctttgat  putative branch site (score: 5)
                                     tccttcttgtatttct  CT-rich tract
        tattcaatatttga  TA-rich tract