Sequence
atgc intronic sequence ATGC exonic sequencegtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
Basic information
species | Glycine max |
transcript | GLYMA15G13380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 3'ss of exon 5
---gtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
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gtatttatctgttttttcagataacctttgccacagcaatacattcttgatgcatttgtaacatttggacaactgggtttgtagGTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGG
upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G390374_T01 (Zea mays), 3'ss of exon 5
----------------------------gtagtttatatccatggattaccc-tctggt--tgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
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gtaccgaggttaaatctgtctttcagggataccttatgcacatatgatatacatatagtcctgatcatctgatgtatag----taacacttggacatct---gagtatgtagGTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGG
upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 4
gtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
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gtactccctatccatatttttgtatctagtacaatattgcataacaaattcaataagatgagtcccgtttctcttctatagGTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11689067|gb|BF596743.1|BF596743EST: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAG GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA
genomic: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttata ... gtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG
ctttgat putative branch site (score: 5)
tccttcttgtatttct CT-rich tract
tattcaatatttga TA-rich tract