1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgcattgtggatgcctgctgctagtgttggaaaatgtgattcaatgtctattggtaaatgtcaaatgataatgtgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
species | Glycine max |
transcript | GLYMA15G12970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tgtctattggtaaatgtcaaatgataatgtgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
tttgttctctttctgt CT-rich tract
aaatgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattgtggatgcctgctgctagtgttggaaaatgtgattcaatgtctattggtaaatgtcaaatgataatgtgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-tgcattg
- - - - -ggatgcc
- - - - - - - - tgctgct
- - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - caatgtc