1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attttatgacagtaccgggttctagttccttttgtagacattatgcatttaattgctctgcattctatctcacaatgtcatgccactttgtgctttccagAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
species | Glycine max |
transcript | GLYMA15G12100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACGAGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTTCGGCCAAG AGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATTEST: gi|193481845|gb|FK446964.1|FK446964
genomic: GGACGAGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTTCGGCCAAGgtgataagtt ... tgctttccagAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATT
EST: GTTGTTATTTCCGGAACAGTATTATTTGTTTCGGCCAAG AGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATT
genomic: GTTGTTATTTCCGGAACAG-A-TA-TTG-TTCGGCCAAGgtgataagtt ... tgctttccagAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATT
catttaattgctctgcattctatctcacaatgtcatgccactttgtgctttccagAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
atctcac putative branch site (score: 3)
tgctttcc putative PPT
attctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttatgacagtaccgggttctagttccttttgtagacattatgcatttaattgctctgcattctatctcacaatgtcatgccactttgtgctttccagAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
- - - - - - - - - - - - - -ccttttg
- - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcca