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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttttgaatgcacacatttttatttcataatattcaatttgataatacattggagccacttactgtgtttccatgtggtttttagGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAGTCTTCAAGATCTTGGTACCCT

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925311|gb|AW831398.1|AW831398
EST:     TCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTT                         GAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAG
genomic: TCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTgtaagttttt ... tggtttttagGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcaatttgataatacattggagccacttactgtgtttccatgtggtttttagGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAGTCTTCAAGATCTTGGTACCCT
                          cacttac  putative branch site (score: 2)
                                                ttttt  putative PPT
     aatttgataatacatt  TA-rich tract