1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtttttctgattgatcaacgcatataattaataataattagtatctattcaagtatcaacaatataagcaatatattgctgtggctaaagctaatcgatattaatttcgtggtttgtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGCACGCATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCA
species | Glycine max |
transcript | GLYMA15G11680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAAGCEST: gi|20448856|gb|BQ252980.1|BQ252980
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGCEST: gi|13311687|gb|BG405338.1|BG405338
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGCEST: gi|254322703|gb|GR835525.1|GR835525
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAA-CAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGCEST: gi|24136203|gb|BU926713.1|BU926713
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGCEST: gi|17400628|gb|BM177410.1|BM177410
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
EST: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAA GTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
genomic: GAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttttt ... gtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGC
atatattgctgtggctaaagctaatcgatattaatttcgtggtttgtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGCACGCATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCA
tattaat putative branch site (score: 2)
tttgttt putative PPT
taatcgatattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttctgattgatcaacgcatataattaataataattagtatctattcaagtatcaacaatataagcaatatattgctgtggctaaagctaatcgatattaatttcgtggtttgtttatatagGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGCACGCATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT