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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcctctgttaattaacattcacacctgattactatctatacattttgtaaacaacagcttaattaatgtgaatcttgaccacatttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTAT

Basic information

species Glycine max
transcript GLYMA15G11350.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287660|gb|BI471551.1|BI471551
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|58023286|gb|CX710027.1|CX710027
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|31308768|gb|CD393971.1|CD393971
EST:     GCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: GCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|151400841|gb|EV270655.1|EV270655
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCTTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|23731152|gb|BU763683.1|BU763683
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|213608886|gb|DB980784.1|DB980784
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|151397563|gb|EV267436.1|EV267436
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|10236465|gb|BE805353.1|BE805353
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAATATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|214006459|gb|DB987212.1|DB987212
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTT-GG-GCATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|21256443|gb|BQ453331.1|BQ453331
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
EST: gi|58016888|gb|CX703630.1|CX703630
EST:     TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTG                         GGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG
genomic: TCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGgtaatgcctc ... catttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacattttgtaaacaacagcttaattaatgtgaatcttgaccacatttttcagGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTAT
                                    tcttgac  putative branch site (score: 3)
                                             catttttc  putative PPT
                      ttaattaatgtgaat  TA-rich tract