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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactctttctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatcttgtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatagGAAAGAGATCCCATTGATGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGTATCATACCTCTTGTTGTTG

Basic information

species Glycine max
transcript GLYMA15G10970.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 5
gtatgactctttctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatcttgtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatagGAAAGAGATCCCATTGATGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGTATCATACCTCTTGTTGTTG------------------
                                                     |       |  |||  |||    || ||||     | |  || | | ||     | ||| | |||   |||    || |    ||  |||  ||| ||    | ||   ||||||| ||||||||||| || || |||||||  |||||||||||||| ||| || |  | | |||||   ||||||| ||||                  
-----------------------------------------------------agggagcatcatcctctgag---ttttagtg----ggtgtcacatatttctatttcaagaagtttctttaa----ttgatgtttcttattctatttttctactattgtcagGAAAGGGATCCCATTGAGGGTCCTATGCCTCGCCTTGATACTCGCTTGTGCTTGTTACTCTCTATCACGACTCTTGTGGTTGCTGATCTTATTGAGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatagGAAAGAGATCCCATTGATGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGTATCATACCTCTTGTTGTTG
                                      tgttgat  putative branch site (score: 4)
                                            tttgttt  CT-rich tract
                              aatttaattgttgatt  TA-rich tract