1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcgatctcatgatattggaggctgcagagtatatatattttcagaagacaatgaaaatgcacacaattcagtatttaatttcaatatgtcttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAA
species | Glycine max |
transcript | GLYMA15G10470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAG ATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCEST: gi|19270486|gb|BM886742.1|BM886742
genomic: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAGgtggcttaaa ... ttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCC
EST: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAG ATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCEST: gi|51341621|gb|CO982938.1|CO982938
genomic: CCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAGgtggcttaaa ... ttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCC
EST: CAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAG ATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATNNCGTCC
genomic: CAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAGgtggcttaaa ... ttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCC
agacaatgaaaatgcacacaattcagtatttaatttcaatatgtcttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAA
tcttgac putative branch site (score: 3)
aattcagtatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgatctcatgatattggaggctgcagagtatatatattttcagaagacaatgaaaatgcacacaattcagtatttaatttcaatatgtcttgactatagATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAA
- - -ctcatga
- - - - - - - - - aggctgc
- - - - - - - - - - - - - - - - - - - - - - - - caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacaa