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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgatcacttctggattttgatctggtaatttctgtttttttccccattgcttcaatattatttcttgtgttataatagGGCTTCGCAATGCTTATGGATGGGAATCGTATTGAAGACCTCCAGAGAATGTACTTACTCTTTTCAAGGGTCAATGCCCTCGAGTCACTGAGGCTGGCCA

Basic information

species Glycine max
transcript GLYMA15G10030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------gttttgatcacttctggattttga---tctggtaatttctgtttt-tttccccattgcttcaatattatttc-ttgtgttataat-agGGCTTCGCAATGCTTATGGATGGGAATCGTATTGAAGACCTCCAGAGAATGTACTTACTCTTTTCAAGGGTCAATGCCCTCGAGTCACTGAGGCTGGCCA
                           |||  ||| || | | | ||     ||||  |  || ||| || |||    | | | |  || || |  | || || |  |   |||| |||   ||||| |||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || | |||| 
gtgtaaatcatggcatgattgtctttctttcttcatttgttgctcttctacctctgccaggttttgtgttgtttttaaagtacatatatgttttccccttctggtccatccagGGTTTCATGATGCTGATGGATGGAAATCGAATTGAGGACCTCCAGAGGATGTATTTACTATTTTCAAGGGTTAATGCCCTCGAATCACTAAGACAGGCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaatttctgtttttttccccattgcttcaatattatttcttgtgttataatagGGCTTCGCAATGCTTATGGATGGGAATCGTATTGAAGACCTCCAGAGAATGTACTTACTCTTTTCAAGGGTCAATGCCCTCGAGTCACTGAGGCTGGCCA
                           ttcaatattatttctt  TA-rich tract